|
|
Response surface methodology analysis for detecting human H1N1 influenza virus based on loop-mediated isothermal amplification technology |
CAI Wenkai1 HAO Zongjie2 SU Yeyu1 LIN Yiping3▲
|
1.SchoolofPharmacyandPharmaceuticalScience,XiamenMedicalCollege,FujianProvince,Xiamen 361000,China;
2.WuHan Landing Medical Laboratory Co.,Ltd,Hubei Province,Wuhan 430000,China;
3.Department of Clinical Laboratory,Xiamen City Jimei District Center for Disease Control and Prevention,Fujian Province,Xiamen 361000,China |
|
|
Abstract Objective In order to establish a ring-mediated isothermal amplification detection system for human H1N1 influenza virus,the nucleic acid amplification efficiency of H1N1 virus was used as an indicator,and to explore optimal reaction conditions for loop mediated isothermal amplification(LAMP)detection of H1N1 influenza virus by response surface analysis optimization.Methods Based on the principle of Box-Benhnken response design,the key factors affecting LAMP reaction (betaine concentration,primer concentration,and reaction temperature) were optimized by the three factors level response surface method.At the same time,60 clinical nucleic acid specimens of confirmed influenza A and 60 nucleic acid samples of healthy people were selected and evaluated by polymerase chain reaction (PCR) assay and LAMP assay comparatively (the evaluation indexes included sensitivity,specificity and accuracy).Results The response surface regression model was able to better predict the relationship between the LAMP detection effect and betaine concentration,primer concentration and reaction temperature,and the optimized LAMP improved the detection sensitivity and shortened the reaction time.Compared with PCR results,the LAMP assay achieved 100% sensitivity,98.9% specificity and 99.2%accuracy,and the lower limit of detection was up to 100 copies/ml.Conclusion The LAMP assay for influenza A (H1N1)established in the present study is a highly efficient,sensitive,and specific assay that does not require complex equipment,and it is suitable for the detection of H1N1 in basic community units or at home,which is useful for the monitoring of H1N1 and the post-outbreak epidemic.It is of great significance for the monitoring of influenza A disease and the emergency detection of outbreaks.
|
|
|
|
|
[1] |
王菊,伍义兰,张龙举.国内三十年甲型H1N1 流感临床及流行特点分析[J].中国呼吸与危重监护杂志,2021,20(3):164-169.
|
[2] |
R R,Dalal A,Mohan H,et al.Detection methods for influenza A H1N1 virus with special reference to biosensors:a review[J].Biosci Rep,2020,28:40(2).
|
[3] |
McLean HQ,Belongia EA.Influenza Vaccine Effectiveness:NewInsightsand Challenges[J].Cold SpringHarb PerspectMed,2021,1(6):11-17.
|
[4] |
Notomi T,Okayama H,Masubuchi H,et al.Loop-mediated isothermal amplification of DNA[J].Nucleic Acids Res,2000,28(12):E63.
|
[5] |
邱栎臻,杨明珠,骈红茹,等.基于磁珠捕获和连接的免核酸提取的恒温扩增技术[J].基础医学与临床,2021,41(11):1653-1657.
|
[6] |
申梁,汪娇,蓝佳明,等.基于逆转录环介导等温扩增技术的SARS-CoV-2 检测方法的建立[J].国际病毒学杂志,2021,28(3):245-250.
|
[7] |
刘云霞,仇微红,叶贺佳,等.新城疫病毒基因Ⅶ型辅助质粒的构建[J].养禽与禽病防治,2021,10(6):9-13.
|
[8] |
刘文霞,王玮,林松洋,等.不同增强剂对荧光PCR 中尿素,血红素和胆酸盐抑制作用消除效果研究[J].检验医学,2022,37(2):155-158.
|
[9] |
吴伟怀,刘宝慧,汪全伟,等.咖啡叶锈病菌单管巢式PCR检测体系的建立与应用[J].特产研究,2023,45(5):1-7.
|
[10] |
刘丹妮,武海萍,周国华.可视化分析在病原体核酸现场快速检测中的研究进展[J].遗传,2023,45(4):306-323.
|
[11] |
施琦,邹大阳,杨宇,等.建立可视化甲型H1N1 流感病毒的聚合酶螺旋反应检测方法[J].中国国境卫生检疫杂志,2021,44(4):241-245.
|
[12] |
左蓓磊,王唱唱,周宁,等.基于Box-Behnken 响应面法和BP 神经网络的补骨脂磷脂提取工艺优化研究[J].中国医院药学杂志,2023,26(6):601-606.
|
[13] |
常婧,刘青柏,刘明国.酸枣SSR-PCR 反应体系优化[J].北方园艺,2018(12):50-57.
|
[14] |
王丽园,由方伟,李岩,等.心电图、超声在老年左室壁肥厚诊断中准确率、灵敏度、特异度的比较[J].中国老年学杂志,2023,43(8):1798-1800.
|
[15] |
吴芳,卢辰,胡文灏,等.结合LAMP-CRISPR/Cas12b 与热敏感尿嘧啶DNA 糖苷酶实现可消除残留污染的副溶血弧菌快速可视化检测(英文)[J].浙江大学学报B 辑(生物医学与生物技术)(英文版),2023,24(8):749-763.
|
[16] |
Soroka M,Wasowicz B,Rymaszewska A.Loop-Mediated Isothermal Amplification(LAMP):The Better Sibling of PCR?[J].Cells,2021,10(8):1931-1938.
|
[17] |
袁向芬,吕继洲,吴绍强,等.环介导等温扩增技术作为基因快速诊断方法的研究与展望[J].生物技术通报,2018,34(10):64-70.
|
[18] |
Kutsuna S,Saito S,Ohmagari N.Simultaneous diagnosis of dengue virus,Chikungunya virus,and Zika virus infection using a new point-of-care testing(POCT)system based on the loop-mediated isothermal amplification(LAMP)method[J].J Infect Chemother,2020,26(12):1249-1253.
|
[19] |
赵娜,李东,孙殿兴,等.反转录环介导等温扩增甲型流行性感冒病毒[J].中华传染病杂志,2016,34(5):285-287.
|
[20] |
Lu Z,Handy SM,Zhang N,et al.Development and Validation of a Species-specific PCR Method for the Identification of Ginseng Species Using Orthogonal Approaches[J].Planta Med,2022,88(12):1004-1019.
|
[21] |
张姝,张永杰,郝爱静.高AT 含量DNA 片段PCR 扩增体系的优化[J].陕西师范大学学报(自然科学版),2020,48(5):64-67.
|
|
|
|